This page is an evolving resource for my lab group and anyone else interested in marine microbiology.
Protocols
Analytical Labs:
UMCES CASIF Stable Isotope Facility
UC Davis Stable Isotope Facility, Analytical Services
Bioinformatics Links:
Intro to perl and Unix for biologists
R and Bioconductor Manual
iMicrobe – where most of CAMERA ended up
MAFFT – command line program for multiple sequence alignment
AliView – current favorite free alignment editor for Mac. can be configured to kick output directly to FastTree and FigTree
FastTree – fast ML trees. But see also.
FigTree – phylogenetic tree viewer
Mauve – genome alignment
mothur – analysis of 16S rRNA amplicon data, among other things
Other Useful Data Sources:
BCO-DMO – Repository for NSF funded Biological and Chemical Oceanography data
eWOCE – World Ocean Circulation Experiment data